Package: avoncap 0.0.0.9028
avoncap: AvonCap Study Analysis
A WIP set of functions allowing data load, wrangling of the AvonCap data set.
Authors:
avoncap_0.0.0.9028.tar.gz
avoncap_0.0.0.9028.zip(r-4.5)avoncap_0.0.0.9028.zip(r-4.4)avoncap_0.0.0.9028.zip(r-4.3)
avoncap_0.0.0.9028.tgz(r-4.4-any)avoncap_0.0.0.9028.tgz(r-4.3-any)
avoncap_0.0.0.9028.tar.gz(r-4.5-noble)avoncap_0.0.0.9028.tar.gz(r-4.4-noble)
avoncap_0.0.0.9028.tgz(r-4.4-emscripten)avoncap_0.0.0.9028.tgz(r-4.3-emscripten)
avoncap.pdf |avoncap.html✨
avoncap/json (API)
# Install 'avoncap' in R: |
install.packages('avoncap', repos = c('https://bristol-vaccine-centre.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bristol-vaccine-centre/avoncap/issues
- denom_by_age_by_day - The avoncap denominator dataset
- frameworks - Frameworks
- icb_surgeries - GP surgeries in the Bristol ICB area
- imd_to_townsend - High level IMD to Townsend score map
- key_dates - Key dates:
- phe_serotypes - Pneumococcal UAD serotypes
- serotype_data - Pneumococcal UAD serotype groups and crossmaps
- serotype_pcv_map - Pneumococcal serotype PCV groups
- serotype_uad_map - Serotype UAD mappings
- uad_groups - UAD serotype groups
- uad_pcv_map - UAD PCV map
Last updated 2 months agofrom:8b2fc0b36b. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 06 2024 |
R-4.5-win | OK | Nov 06 2024 |
R-4.5-linux | OK | Nov 06 2024 |
R-4.4-win | NOTE | Nov 06 2024 |
R-4.4-mac | NOTE | Nov 06 2024 |
R-4.3-win | OK | Nov 06 2024 |
R-4.3-mac | OK | Nov 06 2024 |
Exports:%>%all_filesaugment_dataaugment_genericbinomial_proportion_pointscut_integerdefault_column_namesderive_admission_episodederive_aLRTD_categoriesderive_antiviral_statusderive_catchment_statusderive_completed_vaccination_statusderive_continuous_categoriesderive_continuous_categories_pneumoderive_covid_statusderive_diagnosis_categoriesderive_effective_vaccination_statusderive_genomic_variantderive_gp_linkagederive_haematology_categoriesderive_hospital_burden_outcomesderive_infective_classificationderive_invasive_statusderive_nosocomial_covid_statusderive_nosocomial_statusderive_pandemic_timingsderive_patient_identifierderive_pcv_groupingsderive_phe_pcv_groupderive_pneumo_clinical_syndromederive_pneumo_polyfillderive_pneumo_uad_panelderive_pneumo_uad_statusderive_pneumococcal_categoriesderive_pneumococcal_high_riskderive_pneumococcal_risk_categoryderive_polyfill_centralderive_polyfill_edderive_presumed_diagnosis_categoriesderive_qcovidderive_quintile_categoryderive_severe_disease_outcomesderive_simpler_comorbiditiesderive_survival_censoringderive_survival_times_avoncapderive_survival_times_pneumoderive_templatederive_vaccination_timingsderive_vaccine_combinationsderive_WHO_outcome_scoreextract_dependenciesfind_new_field_namesget_value_setsinputkm_plotload_datamap_avoncap_centralmap_avoncap_consentmap_avoncap_edmap_avoncap_ed_consentmap_avoncap_haemmap_avoncap_micromap_avoncap_pneumococcalmap_avoncap_radiomap_avoncap_virolmap_urine_antigensmap_urine_binaxmost_recent_filesnormalise_dataoriginal_field_namesreadable_labelreadable_label_mappingrelevel_serotypessave_data_source_infoscale_fill_serotypeset_inputspline_term_plotstacked_barplotstart_date_of_weekstudy_weekupset_plotvalid_inputsvalidate_datawrite_issuesxglimpse
Dependencies:askpassassertthatbase64encbinombitbit64clicliprcolorspacecpp11crayoncurldata.treedigestdplyrdtrackrfansifarverfastmapforcatsfsgenericsggplot2ggstancegluegtablehmshtmltoolsisobandjsonlitelabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmenplyrpatchworkpdftoolspillarpkgconfigplyrpngprettyunitsprogresspurrrqpdfR6rappdirsRColorBrewerRcppreadrrlangrsvgscalesstringistringrsurvivalsystibbletidyrtidyselecttimechangetzdbutf8V8vctrsviridisLitevroomwithrwritexlyaml