tableone - Descriptive Tables for Observational or Interventional Studies

Generating tabular summaries of data in a format suitable for reporting in journal articles is fiddly and slows down more detailed analysis. Comparing two populations with respect to an intervention, and reporting it is a task that can be largely automated.

Last updated

10.18 score 5 stars 12 dependents 3.5k scripts 24k downloads

interfacer - Define and Enforce Contracts for Dataframes as Function Parameters

A dataframe validation framework for package builders who use dataframes as function parameters. It performs checks on column names, coerces data-types, and checks grouping to make sure user inputs conform to a specification provided by the package author. It provides a mechanism for package authors to automatically document supported dataframe inputs and selectively dispatch to functions depending on the format of a dataframe much like S3 does for classes. It also contains some developer tools to make working with and documenting dataframe specifications easier. It helps package developers to improve their documentation and simplifies parameter validation where dataframes are used as function parameters.

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4.98 score 2 stars 3 dependents 21 scripts 176 downloads

rsurvstat - Download Infectious Disease Data from 'SurvStat' (Robert Koch Institute)

Provides an interface to the 'SurvStat' web service from the Robert Koch Institute (<https://tools.rki.de/SurvStat/SurvStatWebService.svc>) allowing downloads of disease time series stratified by pathogen type and subtype, age, and geography from notifiable disease reports in Germany.

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4.40 score 5 scripts 195 downloads

growthrates - Estimate Incidence, Proportions and Exponential Growth Rates

Simple statistical models and visualisations for calculating the incidence, proportion, exponential growth rate, and reproduction number of infectious disease case timeseries. This toolkit was largely developed during the COVID-19 pandemic.

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3.94 score 2 stars 146 scripts 477 downloads

pkgutils - Functions for building functions

A suite of tools for helping in function and package development. This includes functions that check variables for consistency, or help parse out inputs to functions. This has a particular focus on inputs that use formula or `tidyselect` interfaces to define the parts of a dataframe that we might be interested in.

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3.52 score 2 stars 1 dependents 11 scripts 3 downloads

testerror - Uncertainty in Multiplex Panel Testing

Provides methods to support the estimation of epidemiological parameters based on the results of multiplex panel tests.

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3.40 score 1 stars 4 scripts

modelfitter - Bootstrapping models and model fits

This is a very early work in progress.

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2.00 score 1 stars 2 scripts

avoncap - AvonCap Study Analysis

A WIP set of functions allowing data load, wrangling of the AvonCap data set.

Last updated

1.74 score 11 scripts