Package: modelfitter 0.0.0.9031

Robert Challen

modelfitter: Bootstrapping models and model fits

This is a very early work in progress.

Authors:Robert Challen [aut, cre]

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modelfitter.pdf |modelfitter.html✨
modelfitter/json (API)

# Install 'modelfitter' in R:
install.packages('modelfitter', repos = c('https://bristol-vaccine-centre.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bristol-vaccine-centre/modelfitter/issues

On CRAN:

2.18 score 1 stars 41 exports 118 dependencies

Last updated 6 months agofrom:0b74981b56. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 23 2024
R-4.5-winERROROct 23 2024
R-4.5-linuxERROROct 23 2024
R-4.4-winERROROct 23 2024
R-4.4-macERROROct 23 2024
R-4.3-winERROROct 23 2024
R-4.3-macERROROct 23 2024

Exports:%>%as_varsbootstrap_providercombine_bootsconfigure_modelconfigure_modelscox_modeldata_subset_providerexecute_configurationf_lhs_varsf_rhs_varsformat_ciformat_modelformat_ratioformat_summaryformat_summary_rowsformula_providerglobal_p_valueimputation_providerimpute_datalog_binomiallog_binomial_2logistic_regressionlogistic_regression_orderedmodel_function_providermodel_labelsplot_regressionpmixnormqmixnormquasi_poissonquasi_poisson_orderedraw_data_providerrobust_poissonrobust_poisson_2run_modelrun_modelsspline_term_plotsprintf_listsummarise_bootssummarise_fitsunivariate_from_multivariate

Dependencies:abindassertthatbackportsbase64encbayestestRbitbit64bootbroomcachemcarcarDataclicliprcodacodetoolscolorspacecommonmarkcowplotcpp11crayondatawizardDerivdigestdoBydoParalleldplyrelrmemmeansestimabilityfansifarverfastmapforcatsforeachFormulafsgeepackgenericsggplot2ggstanceglm2glmnetgluegtablehavenhmshtmltoolshuxtableinsightisobanditeratorsitertools2jomolabelinglatticelifecyclelme4lmtestlogbinmagrittrMASSMatrixMatrixModelsmemoisemgcvmicemicrobenchmarkminqamitmlmodelrmunsellmvtnormnlmenloptrnnetnumDerivordinalpanpatchworkpbkrtestperformancepillarpkgconfigplyrprettyunitsprogresspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadrrlangrpartsandwichscalesshapeSparseMstringistringrsurvivalsystemfontstibbletidyrtidyselectturboEMtzdbucminfutf8vctrsviridisLitevroomwithrxml2zoo

Readme and manuals

Help Manual

Help pageTopics
Reuse tidy-select syntax outside of a tidy-select functionas_vars
Provide a access to bootstrap resamples of a datasetbootstrap_provider
Configure a single model fit using the 'modelfitter' frameworkconfigure_model
Configure a set of model fits from a specification of different combinationsconfigure_models
Fit standard cox model.cox_model
Provide a mechanism for subsetting datadata_subset_provider
Fit exact logistic regressionexact_logistic_regression
Fit statistical models defined in a 'modelfitter' configurationexecute_configuration
Get all used variables on LHS of a formulaf_lhs_vars
Get all used variables on LHS of a formulaf_rhs_vars
Format a confidence intervalformat_ci
Generate a table for a single model outputformat_model
Format a ratio, truncating at a set level above and below 1 on log scale.format_ratio
Format a summary of multiple fits into a table.format_summary
Construct a configuration for multiple formulaeformula_provider
Calculate a global P-value for a model fit for each of the predictors.global_p_value
Provide access to missing data imputationsimputation_provider
Fit standard log binomial regression using 'stats::glm'log_binomial
Fit standard log binomial regression using 'logbin::logbin'log_binomial_2
Fit standard logistic regression with unordered factors.logistic_regression
Fit standard logistic regression.logistic_regression_ordered
Construct a configuration for multiple statistical modelsmodel_function_provider
Creates a table or plot row template for a set of modelsmodel_labels
The cumulative density function of a mixture of normal distributionspmixnorm
A quantile function for a mixture of normal distributionsqmixnorm
Fit standard poisson regressionquasi_poisson
Fit standard poisson regression with ordered contrastsquasi_poisson_ordered
Provide a access to a datasetraw_data_provider
Fit robust poisson regression using sandwich estimatorsrobust_poisson
Fit robust poisson regression using 'geepack::glm'robust_poisson_2
Spline term marginal effects plotspline_term_plot
Sprintf with a list inputsprintf_list
Summarise a modelfitter executionsummarise_fits
Convert multivariate formula to list of univariate formulaeunivariate_from_multivariate